Maize gene expression database

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August undefined, 2024

WebProject personnel added significant data (including but not limited to reference maps, map scores, insertional mutant, locus, gene model, and sequence information for all subspecies of maize) to the database. Most notably, the expression of maize genes across 60 tissue types and developmental stages was mapped to the genome sequence in a way ... WebJan 1, 2024 · MaizeCUBIC is a free database that describes genomic variations, gene expression, phenotypes and quantitative trait locus (QTLs) for a maize CUBIC population (24 founders and 1404 inbred offspring).

MASISH: a database for gene expression in maize seeds

WebApr 23, 2013 · Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays Rajandeep S. Sekhon, Roman Briskine, Candice N. Hirsch, Chad L. Myers, Nathan M. Springer, C. Robin Buell, Natalia de Leon, Shawn M. Kaeppler x Published: April 23, 2013 … WebSep 4, 2024 · Maize (Zea mays) is the most produced (as measured by tonnes) staple crop world-wide and has been the focus of intense breeding efforts to improve agronomic … build montaraz bdo

Evolutionarily informed deep learning methods for predicting ... - PNAS

WebApr 14, 2014 · We found that 46,274 genes were expressed in at least one sample ( Dataset S1 ). Of these, 30,858 genes (66.7%) produced mRNAs detected in all samples … WebSep 4, 2024 · To facilitate breeding and research efforts in maize, we analyzed publicly available transcriptomic data for the reference maize inbred, B73, and developed the … WebWe would like to show you a description here but the site won’t allow us. build montante

PlantGDB - Resources for Plant Comparative Genomics

WebJan 30, 2015 · Sorghum responds to the ingress of the fungal pathogen Colletotrichum sublineolum through the biosynthesis of 3-deoxyanthocyanidin phytoalexins at the site of primary infection. Biosynthesis of 3-deoxyanthocyanidins in sorghum requires a MYB transcription factor encoded by yellow seed1 (y1), an orthologue of the maize gene … WebIn this study, we analyzed stomatal behavior, the key components of C and N metabolism, and the gene expression and activity of enzymes involved in the C and N metabolism in maize plants. The results showed that the application of melatonin (100 μM) significantly increased maize growth and sustained the opening of stomata, and secondarily ... build monster workstation 4k 3dWebAn Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development Authors Scott C Stelpflug , Rajandeep S Sekhon , Brieanne … build monk pvp wow

"WebMar 6, 2024 · To generate the output of the model (i.e., a binary value representing whether a gene is expressed or unexpressed), a comprehensive atlas of gene expression in maize covering major tissues at various developmental stages was generated by applying a unified pipeline on 422 tissues from seven RNA-Seq studies ( 9 – 15) (for full details, see … " - Maize gene expression database

Maize gene expression database

National Center for Biotechnology Information

WebZea mays (maize) is the most widely produced crop in United States, and U.S. agriculture accounted for 36% of world maize production in 2015. Maize has also been in the center … WebNov 9, 2007 · Expression patterns and protein structural analysis identified maize candidates likely having conserved gene function of TFL1. Expression patterns and interaction of the ZCN8 protein with the floral activator DLF1 in the yeast (Saccharomyces cerevisiae) two-hybrid assay strongly supports that ZCN8 plays an orthologous FT …

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http://plantgdb.org/ WebSep 24, 2024 · This data-driven hypothesis is supported by the fact that: (i) the expression levels of N-DEGs have been used as biomarkers of N status across maize genotypes 21, and (ii) our phenotypic data ...

WebDec 22, 2024 · Symbiotic insect bacteria participate in insect–plant interactions by changing maize gene expression profiles, which might be used to develop anti-pest microbial agents by activating plant defense system with identified microbes. ... The sample data quality was good and had high consistency rates (Supplementary Table 2, 3). All four bacteria ... WebMay 9, 2011 · The bulk of questions asked over the past 3 years concern how the genome of inbred line B73 was sequenced, how this sequence can be accessed and used, and …

WebDec 15, 2011 · Check out poster P56 "Discovery, annotation and expression analysis of arginine/serine (SR) proteins in maize using the Plant Genome Database PlantGDB". (1-28-2012) GenBank Release 187 (Jan 31) GenBank Release 187.0 sequence data (close date 12-15-2011) have been processed and are available for downloading at PlantGDB. WebT G A C T G A C T G A C T . . . . natural variation envi r onment World eFP Plant eFP Tissue & Experiment eFP Cell eFP Chomosome Viewer Interaction Viewer Molecule …

WebCOB currently contains the expression data from a maize expression atlas (Sekhon et al., 2011) that includes 60 different stages or tissues from a single genotype, B73. COB also …

WebJun 14, 2024 · Spatial organization of regulatory elements and its impact on gene expression in plants remain unclear. Here, the authors construct maize chromatin interaction maps using chromatin interaction ... build montageWebThe gene sources for the MaizeGDB gene sets include both the name of the maize line and the MaizeGDB gene set name, e.g. "B73 Zm00001eb.1", to make it easy to select a … crs rengoWebproduced from gene families whose members are tandemly arrayed and thereby occupy large DNA segments in their chromosomal location. In those cases, it is difﬁcult to deter-mine the contribution of individual gene copies in gene expression without analyzing the intact gene cluster. Clusters like those of disease resistance genes can provide ... build monster truck gamesWebDec 5, 2010 · MASISH is an online database holding information for gene expression spatial patterns in maize seeds based on in situ hybridization experiments. The web … crs renderingWebIt has a large genome of about 2.4 gigabases with a haploid chromosome number of 10 (2n=2x=20) [2-4]. Maize is distinguished from other grasses in that its genome arose … buildmorehttp://maize.uga.edu/ crs rent a fridge ltdWebTurboCHO™ Protein Expression in Singapore as fast as 8 BDs; TurboCHO™ Protein Expression Upgraded; ... CloneEZ™ Gene Database; For each citation that was shared on social media (LinkedIn, Facebook, or Twitter) with the “@GenScript” tag, the author will be rewarded with a $10 Amazon gift card or 2,000 GS points. ... Plasma membrane ... build moore credit llc